PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_16012_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 559aa    MW: 62463.3 Da    PI: 10.5331
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_16012_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.3e-084380141
                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
                       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                                          ++rW t+E+++l  av ++G+ +W+ +a+++   Rtl  c 
  cra_locus_16012_iso_1_len_1902_ver_3 43 KKRWGTWEELILGGAVLRHGTQNWNVVASELR-SRTL--CS 80
                                          68******************************.9998..54 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-44380IPR009057Homeodomain-like
PfamPF002496.4E-64380IPR001005SANT/Myb domain
Gene3DG3DSA:1.20.920.101.3E-11310435IPR001487Bromodomain
SMARTSM002975.5E-7336434IPR001487Bromodomain
PROSITE profilePS500149.256347415IPR001487Bromodomain
PfamPF004394.0E-9349418IPR001487Bromodomain
SuperFamilySSF473702.75E-14361434IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
XKVGEGGGNL VCSFVPXEVE LFDRGRTRGR REMGTDAMVV EPKKRWGTWE ELILGGAVLR  60
HGTQNWNVVA SELRSRTLCS LYFTPEVCKA KYEDLRKRYS GCTAWFEELR KRRVAELKRA  120
LEKSEDSIGS LESKIESLKT EKRHSNQVHC GSSQTESPAP LVRSDGTDSF GKETSKDGLS  180
AGSFTQDART NWSPDGQNPA VASSPKTSVK PEVSQISDGE KDLTRNEPAE PSNIQGGALR  240
KRRGKRKRKL CNTVGKEASV GESDNLGSTD IFSNSRSKET STSDCDQTIK FSSRDSPNAG  300
SCQIRSDNLM GIFDSVAENK VALVFRHRLD SQVISFYWIH CMFDLFFXYI FSLNICYPKQ  360
KRARYKKIIK QHLDFNLIRS RIASCTIKSS KELFRDLLLL ANNALVFYSK RTREYKSAMA  420
LRDIVLKEYR QHFRSSNNTA TSACLPMRSM YNPPVRPRSA RPRPSKHSGP PAKVRQTEDD  480
IAASPHGFLR RIDLVANVPL QSLLLPKKSP KHPAKIKSGS GDGKEGLKRP AAKVKNLSAA  540
RPQAKSSPGL KDKKGGRQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12432GRTRGRREM
295112RKRYSGCTAWFEELRKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016502131.11e-152PREDICTED: bromodomain-containing protein 8-like isoform X4
TrEMBLA0A068TUA50.0A0A068TUA5_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000577581e-140(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55341924